PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g080160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 348aa    MW: 38536.9 Da    PI: 7.0009
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g080160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.79e-701172832154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakr+er +qla++++++++s++++++kr re            +    sa
  Csa09g080160.1 117 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRQERLAQLASLQHHSTSSRETQNTKRLREAsggdnnddkdhSGGGGSA 211
                     7899**********************************************************999977777777777777777666656777899 PP

          DUF702  86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     l +t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Csa09g080160.1 212 LVTTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 283
                     **************998876*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-63120282IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.2E-28122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26231281IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAGFFYLGGR DNNSNNNNKQ DHHQVDKDHH HQDKSNYLCL YKDEIYNNNK GFEIWPPQYF  60
QQQEQPPQQQ HASAAANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG  120
MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRQERLAQ LASLQHHSTS  180
SRETQNTKRL REASGGDNND DKDHSGGGGS ALVTTRVVNA NSNSGLEVSQ HLPPEVNSPA  240
VFRCVRVSSI EEDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHHHHHH LNLLASTATT  300
TNVEETATKA VAGNNSNGLM LDPSSLYPAH QLNSFIAGTP FFTPPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428580.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-172SHI-related sequence 5